3BGA Hydrolase date Nov 26, 2007
title Crystal Structure Of Beta-Galactosidase From Bacteroides Thetaiotaomicron Vpi-5482
authors D.Kumaran, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Beta-Galactosidase
Chain: A, B
Fragment: Residues 24-1022
Engineered: Yes
Organism_scientific: Bacteroides Thetaiotaomicron Vpi-5482
Organism_taxid: 226186
Strain: Vpi-5482, Dsm 2079, Nctc 10582, E50
Atcc: 29148
Gene: Np_810539.1, Bt_1626
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.335 138.864 102.818 90.00 109.73 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CL, MG, MSE, NA enzyme
Gene BT ; NP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (356 Kb) [Save to disk]
  • Biological Unit Coordinates (3bga.pdb1.gz) 339 Kb
  • LPC: Ligand-Protein Contacts for 3BGA
  • CSU: Contacts of Structural Units for 3BGA
  • Likely Quarternary Molecular Structure file(s) for 3BGA
  • Structure Factors (862 Kb)
  • Retrieve 3BGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BGA from S2C, [Save to disk]
  • Re-refined 3bga structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BGA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BGA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bga_A] [3bga] [3bga_B]
  • SWISS-PROT database: [Q8A799]
  • Domain organization of [Q8A799_BACTN] by SWISSPFAM
  • Domain found in 3BGA: [Bgal_small_N ] by SMART
  • Other resources with information on 3BGA
  • Community annotation for 3BGA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science