3BH1 Structural Genomics, Unknown Function date Nov 27, 2007
title Crystal Structure Of Protein Dip2346 From Corynebacterium Di
authors Y.Patskovsky, V.Sridhar, J.B.Bonanno, M.Gilmore, M.Iizuka, C.Gros T.Gheyi, S.R.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New Yo Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Upf0371 Protein Dip2346
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Corynebacterium Diphtheriae Nctc 13129
Organism_taxid: 257309
Strain: Nctc 13129 Biotype Gravis
Atcc: 700971
Gene: Dip2346
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.453 138.936 98.266 90.00 116.49 90.00
method X-Ray Diffractionresolution 2.51 Å
ligand GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (3bh1.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 3BH1
  • CSU: Contacts of Structural Units for 3BH1
  • Likely Quarternary Molecular Structure file(s) for 3BH1
  • Structure Factors (1631 Kb)
  • Retrieve 3BH1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BH1 from S2C, [Save to disk]
  • Re-refined 3bh1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BH1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BH1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BH1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bh1_A] [3bh1_D] [3bh1] [3bh1_B] [3bh1_C]
  • SWISS-PROT database: [Q6NEC9]
  • Domain organization of [Y2346_CORDI] by SWISSPFAM
    • Other resources with information on 3BH1
  • Community annotation for 3BH1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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