3BHE Hydrolase date Nov 28, 2007
title Hiv-1 Protease In Complex With A Three Armed Pyrrolidine Derivative
authors J.Boettcher, A.Blum, A.Heine, W.E.Diederich, G.Klebe
compound source
Molecule: Protease
Chain: A, B
Ec: 3.4.23.16
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus Type 1 (Bru Isolate);
Organism_taxid: 11686
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(D3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.920 57.662 61.823 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand BZN enzyme Hydrolase E.C.3.4.23.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (3bhe.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3BHE
  • CSU: Contacts of Structural Units for 3BHE
  • Likely Quarternary Molecular Structure file(s) for 3BHE
  • Structure Factors (161 Kb)
  • Retrieve 3BHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BHE from S2C, [Save to disk]
  • Re-refined 3bhe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BHE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BHE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bhe] [3bhe_A] [3bhe_B]
  • SWISS-PROT database: [P03367]
  • Domain organization of [POL_HV1BR] by SWISSPFAM
    • Other resources with information on 3BHE
  • Community annotation for 3BHE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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