3BHV Transferase date Nov 29, 2007
title Structure Of Phosphorylated Thr160 Cdk2cyclin A In Complex With The Inhibitor Variolin B
authors A.Echalier, K.Bettayeb, Y.Ferandin, O.Lozach, M.Clement, A.Valette, F.Liger, B.Marquet, J.C.Morris, J.A.Endicott, B.Joseph, L.Meijer
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A, C
Synonym: P33 Protein Kinase, Cdk2
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex

Molecule: Cyclin-A2
Chain: B, D
Fragment: Unp Residues 169-430
Synonym: Cyclin-A
Engineered: Yes

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Ccna2, Ccna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.160 133.968 147.879 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand MG, SGM, TPO, VAR enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceMeriolins, a new class of cell death inducing kinase inhibitors with enhanced selectivity for cyclin-dependent kinases., Bettayeb K, Tirado OM, Marionneau-Lambot S, Ferandin Y, Lozach O, Morris JC, Mateo-Lozano S, Drueckes P, Schachtele C, Kubbutat MH, Liger F, Marquet B, Joseph B, Echalier A, Endicott JA, Notario V, Meijer L, Cancer Res. 2007 Sep 1;67(17):8325-34. PMID:17804748
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (3bhv.pdb1.gz) 105 Kb
  • Biological Unit Coordinates (3bhv.pdb2.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3BHV
  • CSU: Contacts of Structural Units for 3BHV
  • Likely Quarternary Molecular Structure file(s) for 3BHV
  • Structure Factors (1343 Kb)
  • Retrieve 3BHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BHV from S2C, [Save to disk]
  • Re-refined 3bhv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BHV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BHV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bhv_C] [3bhv_D] [3bhv_B] [3bhv] [3bhv_A]
  • SWISS-PROT database: [P30274] [P24941]
  • Domain organization of [CCNA2_BOVIN] [CDK2_HUMAN] by SWISSPFAM
  • Domains found in 3BHV: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 3BHV
  • Community annotation for 3BHV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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