3BMA	Ligase	date	Dec 12, 2007
title	Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase F Streptococcus Pneumoniae R6
authors	Y.Patskovsky, V.Sridhar, J.B.Bonanno, D.Smith, M.Rutter, M.Iizuka K.Bain, T.Gheyi, S.R.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo Sgx Research Center For Structural Genomics (Nysgxrc)
compound		source
Molecule: D-Alanyl-Lipoteichoic Acid Synthetase Chain: A, B, C, D, E, F Fragment: Residues 32-427 Engineered: Yes Mutation: Yes		Organism_scientific: Streptococcus Pneumoniae Organism_taxid: 171101 Strain: R6 Atcc: Baa-255 Gene: Dltd, Spr1979 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_vector: Pet Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry	Space Group: P 21 21 21	R_factor 0.214 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.956 148.064 208.146 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	GOL, SO4	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (419 Kb) [Save to disk] Biological Unit Coordinates (3bma.pdb1.gz) 405 Kb LPC: Ligand-Protein Contacts for 3BMA CSU: Contacts of Structural Units for 3BMA Likely Quarternary Molecular Structure file(s) for 3BMA Structure Factors (3054 Kb) Retrieve 3BMA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BMA from S2C, [Save to disk] Re-refined 3bma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BMA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BMA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BMA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bma_A] [3bma] [3bma_D] [3bma_B] [3bma_F] [3bma_C] [3bma_E] SWISS-PROT database: [Q8DN13] Domain organization of [Q8DN13_STRR6] by SWISSPFAM

Other resources with information on 3BMA

Community annotation for 3BMA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---