3BQ4 Viral Protein date Dec 19, 2007
title Crystal Structure Of Ad35 Fiber Knob
authors L.Pache, S.Venkataraman, G.R.Nemerow, V.S.Reddy
compound source
Molecule: Fiber
Chain: A, B, D, E, F, G
Fragment: Residues 121-323
Engineered: Yes
 Organism_scientific: Human Adenovirus 35
Organism_taxid: 10522
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.332 R_Free 0.352
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.906 173.906 154.145 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, G, E, B


Primary referenceConservation of fiber structure and CD46 usage by subgroup B2 adenoviruses., Pache L, Venkataraman S, Nemerow GR, Reddy VS, Virology. 2008 Jun 5;375(2):573-9. Epub 2008 Mar 11. PMID:18336857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (3bq4.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (3bq4.pdb2.gz) 85 Kb
  • CSU: Contacts of Structural Units for 3BQ4
  • Likely Quarternary Molecular Structure file(s) for 3BQ4
  • Structure Factors (609 Kb)
  • Retrieve 3BQ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BQ4 from S2C, [Save to disk]
  • Re-refined 3bq4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BQ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BQ4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BQ4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bq4_B] [3bq4_E] [3bq4] [3bq4_D] [3bq4_A] [3bq4_G] [3bq4_F]
  • SWISS-PROT database: [Q7T925]
  • Domain organization of [Q7T925_ADE35] by SWISSPFAM
    • Other resources with information on 3BQ4
  • Community annotation for 3BQ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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