3BQI Cell Adhesion date Dec 20, 2007
title Structure Of A Chondroitin Sulphate Binding Dbl3x From A Var Encoded Pfemp1 Protein
authors M.K.Higgins
compound source
Molecule: Erythrocyte Membrane Protein 1
Chain: A
Fragment: Dbl3x Domain
Synonym: Pfemp1 Protein
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_taxid: 5833
Strain: A4
Gene: Var
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami B
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.226 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.482 86.889 92.898 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of a chondroitin sulphate-binding domain important in placental malaria., Higgins MK, J Biol Chem. 2008 Jun 11;. PMID:18550531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3bqi.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3BQI
  • CSU: Contacts of Structural Units for 3BQI
  • Likely Quarternary Molecular Structure file(s) for 3BQI
  • Structure Factors (297 Kb)
  • Retrieve 3BQI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BQI from S2C, [Save to disk]
  • Re-refined 3bqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BQI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BQI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BQI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bqi_A] [3bqi]
  • SWISS-PROT database: [Q6UDW7]
  • Domain organization of [Q6UDW7_PLAFA] by SWISSPFAM
  • Other resources with information on 3BQI
  • Community annotation for 3BQI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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