3BRF	Dna Binding Protein Dna	date	Dec 21, 2007
title	Csl (Lag-1) Bound To Dna With Lin-12 Ram Peptide, C2221
authors	J.J.Wilson, R.A.Kovall
compound		source
Molecule: Dna (5'- D(Dtpdtpdapdcpdtpdgpdtpdgpdgpdgpdapdapdapdgp Chain: B Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'- D(Dapdapdtpdcpdtpdtpdtpdcpdcpdcpdapdcpdapdgp Chain: C Engineered: Yes		Synthetic: Yes
Molecule: Lin-12 And Glp-1 Phenotype Protein 1, Isoform A Chain: A Fragment: Core Domain Synonym: Dna-Binding Protein Lag-1, Lag-1 Protein Engineered: Yes		Organism_scientific: Caenorhabditis Elegans Organism_taxid: 6239 Gene: Lag-1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
Molecule: Protein Lin-12 Chain: D Fragment: Ram Peptide Synonym: Abnormal Cell Lineage Protein 12 Engineered: Yes		Organism_scientific: Caenorhabditis Elegans Organism_taxid: 6239 Gene: Lin-12 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: C 2 2 21	R_factor 0.230 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.944 95.972 223.630 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.47 Å
ligand	SOR	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	RAM induced allostery facilitates assembly of a notch pathway active transcription complex., Friedmann DR, Wilson JJ, Kovall RA, J Biol Chem. 2008 Apr 1;. PMID:18381292

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3brf.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 3BRF CSU: Contacts of Structural Units for 3BRF Likely Quarternary Molecular Structure file(s) for 3BRF Structure Factors (374 Kb) Retrieve 3BRF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BRF from S2C, [Save to disk] Re-refined 3brf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BRF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BRF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BRF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3brf_B] [3brf_C] [3brf_A] [3brf_D] [3brf] SWISS-PROT database: [P14585] [Q9TYY1] Domain organization of [LIN12_CAEEL] [Q9TYY1_CAEEL] by SWISSPFAM Domains found in 3BRF: [BTD] [LAG1_DNAbind ] by SMART

Other resources with information on 3BRF

Community annotation for 3BRF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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