3BV8	Transferase	date	Jan 04, 2008
title	Crystal Structure Of The N-Terminal Domain Of Tetrahydrodipi Acetyltransferase From Staphylococcus Aureus
authors	M.E.Cuff, E.Duggan, S.Clancy, A.Joachimiak, Midwest Center For S Genomics (Mcsg)
compound		source
Molecule: Tetrahydrodipicolinate Acetyltransferase Chain: A Fragment: N-Terminal Domain: Residues 5-88 Engineered: Yes Mutation: Yes		Organism_scientific: Staphylococcus Aureus Subsp. Aureus Organism_taxid: 158878 Strain: Mu50 Atcc: 700699 Gene: Dapd, Sav1397 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg7
symmetry	Space Group: P 63 2 2	R_factor 0.175 R_Free 0.197
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.503 76.503 93.862 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	GOL, MSE, NA	enzyme
note	3BV8 is a representative structure
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (3bv8.pdb1.gz) 20 Kb Biological Unit Coordinates (3bv8.pdb2.gz) 112 Kb LPC: Ligand-Protein Contacts for 3BV8 CSU: Contacts of Structural Units for 3BV8 Likely Quarternary Molecular Structure file(s) for 3BV8 Structure Factors (641 Kb) Retrieve 3BV8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BV8 from S2C, [Save to disk] Re-refined 3bv8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BV8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BV8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BV8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bv8] [3bv8_A] SWISS-PROT database: [Q7A2S0] Domain organization of [DAPH_STAAM] by SWISSPFAM

Other resources with information on 3BV8

Community annotation for 3BV8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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