3BVD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CU, CUA, HAS, HEM, XE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytochrome-c oxidase activit...


    • B
  • cytochrome-c oxidase activit...


    • C


    Primary referenceCrystallographic Studies of Xe and Kr Binding within the Large Internal Cavity of Cytochrome ba3 from Thermus thermophilus: Structural Analysis and Role of Oxygen Transport Channels in the Heme-Cu Oxidases(,)., Luna VM, Chen Y, Fee JA, Stout CD, Biochemistry. 2008 Apr 22;47(16):4657-65. Epub 2008 Apr 1. PMID:18376849
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3bvd.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3BVD
  • CSU: Contacts of Structural Units for 3BVD
  • Likely Quarternary Molecular Structure file(s) for 3BVD
  • Structure Factors (252 Kb)
  • Retrieve 3BVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BVD from S2C, [Save to disk]
  • Re-refined 3bvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bvd] [3bvd_A] [3bvd_B] [3bvd_C]
  • SWISS-PROT database: [Q5SJ79] [Q5SJ80] [P82543]
  • Belongs to the proton-translocating cytochrome oxidase (cox) superfamily according to TCDB.

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