3BWD	Plant Protein	date	Jan 09, 2008
title	Crystal Structure Of The Plant Rho Protein Rop5
authors	C.Thomas, A.Berken
compound		source
Molecule: Rac-Like Gtp-Binding Protein Arac6 Chain: D Fragment: Residues 1-180 Synonym: Gtpase Protein Rop5, Plant Rho Protein Rop5 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: Arac6, Rac2, Rop5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-1
symmetry	Space Group: P 1 21 1	R_factor 0.247 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.420 40.390 57.180 90.00 102.60 90.00
method	X-Ray Diffraction	resolution	1.53 Å
ligand	GDP, MG	enzyme
Gene Ontology	Chain Function Process Component D

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (3bwd.pdb1.gz) 25 Kb LPC: Ligand-Protein Contacts for 3BWD CSU: Contacts of Structural Units for 3BWD Likely Quarternary Molecular Structure file(s) for 3BWD Structure Factors (338 Kb) Retrieve 3BWD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BWD from S2C, [Save to disk] Re-refined 3bwd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BWD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BWD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BWD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bwd] [3bwd_D] SWISS-PROT database: [Q9SBJ6] Domain organization of [RAC6_ARATH] by SWISSPFAM Domain found in 3BWD: [RHO ] by SMART

Other resources with information on 3BWD

Community annotation for 3BWD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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