3BX5 Signaling Protein, Transferase date Jan 11, 2008
title P38 Alpha Map Kinase Complexed With Bms-640994
authors J.S.Sack
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.650 74.360 78.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 304 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe discovery of (R)-2-(sec-butylamino)-N-(2-methyl-5-(methylcarbamoyl)phenyl) thiazole-5-carboxamide (BMS-640994)-A potent and efficacious p38alpha MAP kinase inhibitor., Hynes J Jr, Wu H, Pitt S, Shen DR, Zhang R, Schieven GL, Gillooly KM, Shuster DJ, Taylor TL, Yang X, McIntyre KW, McKinnon M, Zhang H, Marathe PH, Doweyko AM, Kish K, Kiefer SE, Sack JS, Newitt JA, Barrish JC, Dodd J, Leftheris K, Bioorg Med Chem Lett. 2008 Mar 15;18(6):1762-7. Epub 2008 Feb 16. PMID:18313298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3bx5.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3BX5
  • CSU: Contacts of Structural Units for 3BX5
  • Likely Quarternary Molecular Structure file(s) for 3BX5
  • Structure Factors (101 Kb)
  • Retrieve 3BX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BX5 from S2C, [Save to disk]
  • Re-refined 3bx5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BX5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BX5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bx5_A] [3bx5]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3BX5: [S_TKc ] by SMART
  • Other resources with information on 3BX5
  • Community annotation for 3BX5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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