3BY4		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	3CN	enzyme
note	3BY4 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein., Messick TE, Russell NS, Iwata AJ, Sarachan KL, Shiekhattar R, Shanks JR, Reyes-Turcu FE, Wilkinson KD, Marmorstein R, J Biol Chem. 2008 Apr 18;283(16):11038-49. Epub 2008 Feb 12. PMID:18270205

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3by4.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 3BY4 CSU: Contacts of Structural Units for 3BY4 Likely Quarternary Molecular Structure file(s) for 3BY4 Structure Factors (917 Kb) Retrieve 3BY4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BY4 from S2C, [Save to disk] Re-refined 3by4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BY4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3by4] [3by4_A] [3by4_B] SWISS-PROT database: [P43558] [P62988] Domains found in 3BY4: [UBQ] [ZnF_C2H2 ] by SMART

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