3C02 Membrane Protein date Jan 18, 2008
title X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falc
authors Z.E.Newby, R.M.Stroud, Center For Structures Of Membrane Prote (Csmp)
compound source
Molecule: Aquaglyceroporin
Chain: A
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_common: Malaria Parasite
Gene: Aqp
Expression_system: Escherichia Coli
Expression_system_strain: C43(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29b
symmetry Space Group: I 4 2 2
R_factor 0.181 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.430 92.430 193.168 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand BOG, GOL enzyme
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the aquaglyceroporin PfAQP from the malarial parasite Plasmodium falciparum., Newby ZE, O'Connell J 3rd, Robles-Colmenares Y, Khademi S, Miercke LJ, Stroud RM, Nat Struct Mol Biol. 2008 Jun;15(6):619-25. Epub 2008 May 25. PMID:18500352
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3c02.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 3C02
  • CSU: Contacts of Structural Units for 3C02
  • Likely Quarternary Molecular Structure file(s) for 3C02
  • Structure Factors (252 Kb)
  • Retrieve 3C02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C02 from S2C, [Save to disk]
  • Re-refined 3c02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C02
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3C02, from MSDmotif at EBI
  • Fold representative 3c02 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c02] [3c02_A]
  • SWISS-PROT database: [Q8WPZ6]
  • Belongs to the major intrinsic protein (mip) family according to TCDB.
  • Domain organization of [Q8WPZ6_PLAFA] by SWISSPFAM
  • Other resources with information on 3C02
  • Community annotation for 3C02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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