3C08 Immune System date Jan 18, 2008
title Crystal Structure The Fab Fragment Of Matuzumabemd72000 (Fa
authors K.M.Ferguson, J.Schmiedel, T.Knoechel
compound source
Molecule: Matuzumab Fab Light Chain
Chain: L
Engineered: Yes
Other_details: Humanmouse Chimeric Derivative Of Mouse Mon Antibody 425;
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: ,
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: Myeloma
Expression_system_vector_type: Plasmid
Other_details: Humanized Mouse

Molecule: Matuzumab Fab Heavy Chain
Chain: H
Engineered: Yes
Other_details: Humanmouse Chimeric Derivative Of Mouse Mon Antibody 425

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: ,
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: Myeloma
Expression_system_vector_type: Plasmid
Other_details: Humanized Mouse
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.821 61.377 102.675 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand SO4 enzyme
Primary referenceMatuzumab binding to EGFR prevents the conformational rearrangement required for dimerization., Schmiedel J, Blaukat A, Li S, Knochel T, Ferguson KM, Cancer Cell. 2008 Apr;13(4):365-73. PMID:18394559
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (3c08.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3C08
  • CSU: Contacts of Structural Units for 3C08
  • Likely Quarternary Molecular Structure file(s) for 3C08
  • Structure Factors (300 Kb)
  • Retrieve 3C08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C08 from S2C, [Save to disk]
  • Re-refined 3c08 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C08 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C08
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3C08, from MSDmotif at EBI
  • Fold representative 3c08 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c08_H] [3c08_L] [3c08]
  • SWISS-PROT database: [P01857] [P01834]
  • Domain organization of [IGHG1_HUMAN] [IGKC_HUMAN] by SWISSPFAM
  • Domains found in 3C08: [IG_like] [IGv ] by SMART
  • Other resources with information on 3C08
  • Community annotation for 3C08 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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