3C1O Oxidoreductase date Jan 23, 2008
title The Multiple Phenylpropene Synthases In Both Clarkia Breweri Petunia Hybrida Represent Two Distinct Lineages
authors G.V.Louie, J.P.Noel, M.E.Bowman
compound source
Molecule: Eugenol Synthase
Chain: A
Synonym: Brewer'S Clarkia
Engineered: Yes
Organism_scientific: Clarkia Breweri
Organism_taxid: 36903
Gene: Egs1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis8
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.330 87.381 51.545 90.00 101.33 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct protein lineages., Koeduka T, Louie GV, Orlova I, Kish CM, Ibdah M, Wilkerson CG, Bowman ME, Baiga TJ, Noel JP, Dudareva N, Pichersky E, Plant J. 2008 May;54(3):362-74. Epub 2008 Jan 16. PMID:18208524
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3c1o.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3c1o.pdb2.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3C1O
  • CSU: Contacts of Structural Units for 3C1O
  • Likely Quarternary Molecular Structure file(s) for 3C1O
  • Structure Factors (466 Kb)
  • Retrieve 3C1O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C1O from S2C, [Save to disk]
  • Re-refined 3c1o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C1O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C1O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C1O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c1o] [3c1o_A]
  • SWISS-PROT database: [D0VWT0]
  • Domain organization of [D0VWT0_CLABR] by SWISSPFAM
  • Other resources with information on 3C1O
  • Community annotation for 3C1O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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