3C4R Structural Genomics, Unknown Function date Jan 30, 2008
title Crystal Structure Of An Uncharacterized Protein Encoded By C Prophage
authors R.Sugadev, S.K.Burley, S.Swaminathan, S.Ozyurt, J.Luz, New York S Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Uncharacterized Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Escherichia Coli O6
Organism_taxid: 217992
Strain: O6:H1 Cft073 Upec
Atcc: 700928
Gene: C1411
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.826 106.570 88.251 90.00 96.42 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (3c4r.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3C4R
  • CSU: Contacts of Structural Units for 3C4R
  • Likely Quarternary Molecular Structure file(s) for 3C4R
  • Structure Factors (195 Kb)
  • Retrieve 3C4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C4R from S2C, [Save to disk]
  • Re-refined 3c4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C4R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C4R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c4r_A] [3c4r_D] [3c4r] [3c4r_B] [3c4r_C]
  • SWISS-PROT database: [Q8FIL0]
  • Domain organization of [Q8FIL0_ECOL6] by SWISSPFAM
    • Other resources with information on 3C4R
  • Community annotation for 3C4R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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