3C5S Immune System date Feb 01, 2008
title Crystal Structure Of Monoclonal Fab F22-4 Specific For Shigella Flexneri 2a O-Ag
authors F.A.Saul, B.Vulliez-Le-Normand, G.A.Bentley
compound source
Molecule: Fab F22-4 Light Chain
Chain: A, C
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: Balbc

Molecule: Fab F22-4 Heavy Chain
Chain: B, D
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: Balbc
symmetry Space Group: P 1
R_factor 0.199 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.260 59.830 74.380 77.53 83.97 80.89
method X-Ray Diffractionresolution 2.00 Å
Primary referenceStructures of synthetic O-antigen fragments from serotype 2a Shigella flexneri in complex with a protective monoclonal antibody., Vulliez-Le Normand B, Saul FA, Phalipon A, Belot F, Guerreiro C, Mulard LA, Bentley GA, Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9976-81. Epub 2008 Jul 10. PMID:18621718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3c5s.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (3c5s.pdb2.gz) 73 Kb
  • CSU: Contacts of Structural Units for 3C5S
  • Likely Quarternary Molecular Structure file(s) for 3C5S
  • Structure Factors (371 Kb)
  • Retrieve 3C5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C5S from S2C, [Save to disk]
  • Re-refined 3c5s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C5S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C5S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c5s] [3c5s_A] [3c5s_C] [3c5s_B] [3c5s_D]
  • SWISS-PROT database: [P01837]
  • Domain organization of [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 3C5S: [IG_like] [IGv ] by SMART
    • Other resources with information on 3C5S
  • Community annotation for 3C5S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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