3C72	Transferase	date	Feb 06, 2008
title	Engineered Rabggtase In Complex With A Peptidomimetic Inhibi
authors	Z.Guo, Y.W.Wu, K.T.Tan, R.S.Bon, E.Guiu-Rozas, C.Delon, U.T.Nguyen S.Wetzel, S.Arndt, R.S.Goody, W.Blankenfeldt, K.Alexandrov, H.Wa
compound		source
Molecule: Geranylgeranyl Transferase Type-2 Subunit Alpha Chain: A Synonym: Geranylgeranyl Transferase Type II Subunit Alpha, Geranylgeranyltransferase Subunit Alpha, Rab Geranyl- Geranyltransferase Subunit Alpha, Rab Gg Transferase Alpha, Ggtase Alpha; Ec: 2.5.1.60 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Rabggta, Ggta Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgatev
Molecule: Geranylgeranyl Transferase Type-2 Subunit Beta Chain: B Synonym: Geranylgeranyl Transferase Type II Subunit Beta, R Geranylgeranyltransferase Subunit Beta, Rab Geranyl- Geranyltransferase Subunit Beta, Rab Gg Transferase Beta, R Beta; Ec: 2.5.1.60 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Rabggtb, Ggtb Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 21 21 21	R_factor 0.189 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.192 91.671 115.439 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CA, CX1, ZN	enzyme	Transferase E.C.2.5.1.60 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Development of selective RabGGTase inhibitors and crystal structure of a RabGGTase-inhibitor complex., Guo Z, Wu YW, Tan KT, Bon RS, Guiu-Rozas E, Delon C, Nguyen TU, Wetzel S, Arndt S, Goody RS, Blankenfeldt W, Alexandrov K, Waldmann H, Angew Chem Int Ed Engl. 2008;47(20):3747-50. PMID:18399557

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (3c72.pdb1.gz) 103 Kb LPC: Ligand-Protein Contacts for 3C72 CSU: Contacts of Structural Units for 3C72 Likely Quarternary Molecular Structure file(s) for 3C72 Structure Factors (233 Kb) Retrieve 3C72 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C72 from S2C, [Save to disk] Re-refined 3c72 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3C72 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3C72

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C72, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c72] [3c72_A] [3c72_B] SWISS-PROT database: [Q08602] [Q08603] Domain organization of [PGTA_RAT] [PGTB2_RAT] by SWISSPFAM

Other resources with information on 3C72

Community annotation for 3C72 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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