3C8T Lyase date Feb 13, 2008
title Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. B
authors J.B.Bonanno, J.Freeman, K.T.Bain, S.Chang, R.Romero, D.Smith, S.Wa J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Fumarate Lyase
Chain: A
Fragment: Residues 17-456
Engineered: Yes
 Organism_scientific: Mesorhizobium Sp.
Organism_taxid: 266779
Strain: Bnc1
Gene: Meso_3622
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 42 21 2
R_factor 0.201 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.006 107.006 74.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene MESO
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3c8t.pdb1.gz) 262 Kb
  • CSU: Contacts of Structural Units for 3C8T
  • Likely Quarternary Molecular Structure file(s) for 3C8T
  • Structure Factors (1091 Kb)
  • Retrieve 3C8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C8T from S2C, [Save to disk]
  • Re-refined 3c8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C8T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C8T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c8t] [3c8t_A]
  • SWISS-PROT database: [Q11C84]
  • Domain organization of [Q11C84_MESSB] by SWISSPFAM
  • Domain found in 3C8T: [ADSL_C ] by SMART
    • Other resources with information on 3C8T
  • Community annotation for 3C8T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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