3CC2 The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins date
authors Gurel, G., Blaha, G.
compound source
symmetry
R_factor
R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand 1MA, CD, CL, K, MG, NA, OMG, OMU, PSU, UR3 enzyme
note 3CC2 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


A


B


C


D


E


F
  • ribonuclease P activity


  • G


    H


    I


    J


    K


    L


    M


    N


    O


    P


    Q


    R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceMutations outside the anisomycin-binding site can make ribosomes drug-resistant., Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA, J Mol Biol. 2008 Jun 6;379(3):505-19. Epub 2008 Apr 8. PMID:18455733
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2014 Kb) [Save to disk]
  • Biological Unit Coordinates (3cc2.pdb1.gz) 1972 Kb
  • LPC: Ligand-Protein Contacts for 3CC2
  • CSU: Contacts of Structural Units for 3CC2
  • Likely Quarternary Molecular Structure file(s) for 3CC2
  • Structure Factors (4991 Kb)
  • Retrieve 3CC2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CC2 from S2C, [Save to disk]
  • Re-refined 3cc2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CC2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CC2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CC2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h3cc2, region C:37-307 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cc2_E] [3cc2_I] [3cc2_M] [3cc2_1] [3cc2_P] [3cc2_0] [3cc2_Q] [3cc2_N] [3cc2_V] [3cc2_X] [3cc2_W] [3cc2_D] [3cc2_G] [3cc2_2] [3cc2_H] [3cc2_A] [3cc2_T] [3cc2_B] [3cc2_Y] [3cc2_J] [3cc2_R] [3cc2_L] [3cc2_Z] [3cc2_S] [3cc2_U] [3cc2_9] [3cc2_C] [3cc2_3] [3cc2_F] [3cc2_O] [3cc2_K] [3cc2]
  • SWISS-PROT database: [P60617] [P14122] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domain organization of [RL10_HALMA] [RL11_HALMA] [RL13_HALMA] [RL14_HALMA] [RL15E_HALMA] [RL15_HALMA] [RL18E_HALMA] [RL18_HALMA] [RL19_HALMA] [RL21_HALMA] [RL22_HALMA] [RL23_HALMA] [RL24E_HALMA] [RL24_HALMA] [RL29_HALMA] [RL2_HALMA] [RL30_HALMA] [RL31_HALMA] [RL32_HALMA] [RL37A_HALMA] [RL37_HALMA] [RL39_HALMA] [RL3_HALMA] [RL44_HALMA] [RL4_HALMA] [RL5_HALMA] [RL6_HALMA] [RL7A_HALMA] [RLA0_HALMA] by SWISSPFAM
  • Domains found in 3CC2: [HhH1] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART
  • Other resources with information on 3CC2
  • Community annotation for 3CC2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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