3CCK Immune System date Feb 26, 2008
title Human Cd69
authors J.Brynda, O.Vanek, P.Rezacova
compound source
Molecule: Early Activation Antigen Cd69
Chain: A, B
Fragment: Unp Residues 82-199
Synonym: Early T-Cell Activation Antigen P60, Gp3228, Leu- Ea1, Bl-Acp26, Activation Inducer Molecule, Aim;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd69
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Ril
Expression_system_vector_type: Plasmid
symmetry Space Group: P 61
R_factor 0.191 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.693 85.693 61.881 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL enzyme
Primary referenceSoluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice., Vanek O, Nalezkova M, Kavan D, Borovickova I, Pompach P, Novak P, Kumar V, Vannucci L, Hudecek J, Hofbauerova K, Kopecky V Jr, Brynda J, Kolenko P, Dohnalek J, Kaderavek P, Chmelik J, Gorcik L, Zidek L, Sklenar V, Bezouska K, FEBS J. 2008 Nov;275(22):5589-606. PMID:18959746
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3cck.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3CCK
  • CSU: Contacts of Structural Units for 3CCK
  • Likely Quarternary Molecular Structure file(s) for 3CCK
  • Structure Factors (352 Kb)
  • Retrieve 3CCK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CCK from S2C, [Save to disk]
  • Re-refined 3cck structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CCK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CCK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CCK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cck_A] [3cck_B] [3cck]
  • SWISS-PROT database: [Q07108]
  • Domain organization of [CD69_HUMAN] by SWISSPFAM
  • Domain found in 3CCK: [CLECT ] by SMART
    • Other resources with information on 3CCK
  • Community annotation for 3CCK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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