3CE3 Transferase date Feb 28, 2008
title Crystal Structure Of The Tyrosine Kinase Domain Of The Hepat Growth Factor Receptor C-Met In Complex With A Pyrrolopyridinepyridone Based Inhibitor
authors J.Sack
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Fragment: Tyrosine Kinase Domain, Unp Residues 1049-1360
Synonym: Hgf Receptor, Scatter Factor Receptor, Sf Receptor Receptor, Met Proto-Oncogene Tyrosine Kinase, C-Met;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Met
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_cell_line: Spodoptera Frugiperda 9 (Sf9)
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pachlt-A
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.040 49.137 159.324 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 1FN BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of Pyrrolopyridine-Pyridone Based Inhibitors of Met Kinase: Synthesis, X-ray Crystallographic Analysis, and Biological Activities., Kim KS, Zhang L, Schmidt R, Cai ZW, Wei D, Williams DK, Lombardo LJ, Trainor GL, Xie D, Zhang Y, An Y, Sack JS, Tokarski JS, Darienzo C, Kamath A, Marathe P, Zhang Y, Lippy J, Jeyaseelan R Sr, Wautlet B, Henley B, Gullo-Brown J, Manne V, Hunt JT, Fargnoli J, Borzilleri RM, J Med Chem. 2008 Aug 9. PMID:18690676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3ce3.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3CE3
  • CSU: Contacts of Structural Units for 3CE3
  • Likely Quarternary Molecular Structure file(s) for 3CE3
  • Structure Factors (82 Kb)
  • Retrieve 3CE3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CE3 from S2C, [Save to disk]
  • Re-refined 3ce3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CE3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CE3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CE3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ce3] [3ce3_A]
  • SWISS-PROT database: [P08581]
  • Domain organization of [MET_HUMAN] by SWISSPFAM
  • Domain found in 3CE3: [TyrKc ] by SMART
  • Other resources with information on 3CE3
  • Community annotation for 3CE3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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