3CEM	Transferase	date	Feb 29, 2008
title	Human Glycogen Phosphorylase (Tense State) In Complex With T Allosteric Inhibitor Ave9423
authors	K.U.Wendt, M.K.Dreyer, O.Anderka, T.Klabunde, P.Loenze, E.Defossa D.Schmoll
compound		source
Molecule: Glycogen Phosphorylase, Liver Form Chain: A, B Ec: 2.4.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Pygl Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 31	R_factor 0.155 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.383 124.383 123.429 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.47 Å
ligand	AVD, NBG, PLP	enzyme	Transferase E.C.2.4.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Thermodynamic characterization of allosteric glycogen phosphorylase inhibitors., Anderka O, Loenze P, Klabunde T, Dreyer MK, Defossa E, Wendt KU, Schmoll D, Biochemistry. 2008 Apr 22;47(16):4683-91. Epub 2008 Mar 29. PMID:18373353

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk] Biological Unit Coordinates (3cem.pdb1.gz) 267 Kb LPC: Ligand-Protein Contacts for 3CEM CSU: Contacts of Structural Units for 3CEM Likely Quarternary Molecular Structure file(s) for 3CEM Structure Factors (1204 Kb) Retrieve 3CEM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CEM from S2C, [Save to disk] Re-refined 3cem structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CEM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CEM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CEM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cem] [3cem_A] [3cem_B] SWISS-PROT database: [P06737] Domain organization of [PYGL_HUMAN] by SWISSPFAM

Other resources with information on 3CEM

Community annotation for 3CEM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---