3CHR Hydrolase date Mar 10, 2008
title Crystal Structure Of Leukotriene A4 Hydrolase In Complex Wit N-[4-(Phenylmethoxy)Phenyl]-Butanamide
authors M.M.G.M.Thunnissen, M.Adler, M.Whitlow
compound source
Molecule: Leukotriene A-4 Hydrolase
Chain: A
Synonym: Lta-4 Hydrolase, Leukotriene A(4) Hydrolase
Ec: 3.3.2.6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lta4h, Lta4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt3-Mb4
symmetry Space Group: P 21 21 2
R_factor 0.207 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.346 133.210 83.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 4BS, IMD, YB, ZN BindingDB enzyme Hydrolase E.C.3.3.2.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis of glutamic acid analogs as potent inhibitors of leukotriene A(4) hydrolase., Kirkland TA, Adler M, Bauman JG, Chen M, Haeggstrom JZ, King B, Kochanny MJ, Liang AM, Mendoza L, Phillips GB, Thunnissen M, Trinh L, Whitlow M, Ye B, Ye H, Parkinson J, Guilford WJ, Bioorg Med Chem. 2008 Mar 20;. PMID:18394906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (3chr.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 3CHR
  • CSU: Contacts of Structural Units for 3CHR
  • Likely Quarternary Molecular Structure file(s) for 3CHR
  • Structure Factors (321 Kb)
  • Retrieve 3CHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CHR from S2C, [Save to disk]
  • Re-refined 3chr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CHR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CHR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3chr_A] [3chr]
  • SWISS-PROT database: [P09960]
  • Domain organization of [LKHA4_HUMAN] by SWISSPFAM
  • Domain found in 3CHR: [Leuk-A4-hydro_C ] by SMART
  • Other resources with information on 3CHR
  • Community annotation for 3CHR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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