3CJ5	Transferase	date	Mar 12, 2008
title	Crystal Structure Of Hepatitis C Virus Rna-Dependent Rna Polymerase Ns5b In Complex With Optimized Small Molecule Fragments
authors	J.Hendle
compound		source
Molecule: Rna-Directed Rna Polymerase Chain: A, B Synonym: Ns5b, P68 Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Hepatitis C Virus Subtype 1b Organism_taxid: 31647 Strain: Genotype 1b; Strain Bk Gene: Ns5b Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.797 105.735 126.912 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.92 Å
ligand	SX6	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Fragment-based discovery of hepatitis C virus NS5b RNA polymerase inhibitors., Antonysamy SS, Aubol B, Blaney J, Browner MF, Giannetti AM, Harris SF, Hebert N, Hendle J, Hopkins S, Jefferson E, Kissinger C, Leveque V, Marciano D, McGee E, Najera I, Nolan B, Tomimoto M, Torres E, Wright T, Bioorg Med Chem Lett. 2008 May 1;18(9):2990-5. Epub 2008 Mar 22. PMID:18400495

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk] Biological Unit Coordinates (3cj5.pdb1.gz) 97 Kb Biological Unit Coordinates (3cj5.pdb2.gz) 97 Kb LPC: Ligand-Protein Contacts for 3CJ5 CSU: Contacts of Structural Units for 3CJ5 Likely Quarternary Molecular Structure file(s) for 3CJ5 Structure Factors (657 Kb) Retrieve 3CJ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CJ5 from S2C, [Save to disk] Re-refined 3cj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CJ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CJ5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CJ5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cj5_B] [3cj5_A] [3cj5] SWISS-PROT database: [P26663] Domain organization of [POLG_HCVBK] by SWISSPFAM

Other resources with information on 3CJ5

Community annotation for 3CJ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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