3CJS Transferase Ribosomal Protein date Mar 13, 2008
title Minimal Recognition Complex Between Prma And Ribosomal Prote
authors H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound source
Molecule: Ribosomal Protein L11 Methyltransferase
Chain: A
Fragment: N-Terminal Domain
Synonym: L11 Mtase
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Strain: Hb8
Gene: Prma
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b

Molecule: 50s Ribosomal Protein L11
Chain: B, C
Fragment: N-Terminal Domain
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Strain: Hb8
Gene: Rplk, Rpl11
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 (De3) Prma::Tc
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.206
length a length b length c angle alpha angle beta angle gamma
103.211 33.948 71.090 90.00 131.76 90.00
method X-Ray Diffractionresolution 1.37 Å
ligand EDO enzyme Transferase E.C.2.1.1 BRENDA
note 3CJS is a representative structure
C, B

Primary referenceMultiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase., Demirci H, Gregory ST, Dahlberg AE, Jogl G, Structure. 2008 Jul;16(7):1059-66. PMID:18611379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3cjs.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3cjs.pdb2.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 3CJS
  • CSU: Contacts of Structural Units for 3CJS
  • Likely Quarternary Molecular Structure file(s) for 3CJS
  • Structure Factors (553 Kb)
  • Retrieve 3CJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CJS from S2C, [Save to disk]
  • Re-refined 3cjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CJS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CJS, from MSDmotif at EBI
  • Fold representative 3cjs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cjs_B] [3cjs_C] [3cjs] [3cjs_A]
  • SWISS-PROT database: [Q84BQ9] [P36238]
  • Domain organization of [PRMA_THET8] [RL11_THETH] by SWISSPFAM
  • Domain found in 3CJS: [RL11 ] by SMART
  • Other resources with information on 3CJS
  • Community annotation for 3CJS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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