3CM0 Transferase date Mar 20, 2008
title Crystal Structure Of Adenylate Kinase From Thermus Thermophi
authors N.Nakagawa, N.Kondo, R.Masui, Z.Matsuda, I.Iwamoto, S.Yokoyama, S.Kuramitsu, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Adenylate Kinase
Chain: A
Synonym: Atp-Amp Transphosphorylase, Ak
Ec: 2.7.4.3
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Strain: Hb8
Gene: Adk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3a
symmetry Space Group: P 32 2 1
R_factor 0.205 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.446 51.446 131.474 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Transferase E.C.2.7.4.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3cm0.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 3CM0
  • Likely Quarternary Molecular Structure file(s) for 3CM0
  • Structure Factors (194 Kb)
  • Retrieve 3CM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CM0 from S2C, [Save to disk]
  • Re-refined 3cm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CM0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CM0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cm0] [3cm0_A]
  • SWISS-PROT database: [Q5SHQ9]
  • Domain organization of [KAD_THET8] by SWISSPFAM
    • Other resources with information on 3CM0
  • Community annotation for 3CM0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Adenylate Kinase (the movie)
  • Images from IMB Jena Image Library of Biological Macromolecules.

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