3COL Transcription Regulator date Mar 28, 2008
title Crystal Structure Of Putative Transcription Regulator From Lactobacillus Plantarum
authors C.Chang, L.Bigelow, L.Freeman, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Putative Transcription Regulator
Chain: A, B
Engineered: Yes
 Organism_scientific: Lactobacillus Plantarum Wcfs1
Organism_taxid: 220668
Strain: Wcfs1 Ncimb 8826
Atcc: Baa-793
Gene: Lp_3090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.213 66.936 93.404 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, MSE enzyme
Gene LP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3col.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3COL
  • CSU: Contacts of Structural Units for 3COL
  • Likely Quarternary Molecular Structure file(s) for 3COL
  • Structure Factors (482 Kb)
  • Retrieve 3COL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3COL from S2C, [Save to disk]
  • Re-refined 3col structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3COL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3COL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3COL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3col_B] [3col] [3col_A]
  • SWISS-PROT database: [Q88T92]
  • Domain organization of [Q88T92_LACPL] by SWISSPFAM
    • Other resources with information on 3COL
  • Community annotation for 3COL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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