3CON Hydrolase date Mar 28, 2008
title Crystal Structure Of The Human Nras Gtpase Bound With Gdp
authors L.Nedyalkova, Y.Tong, W.Tempel, L.Shen, P.Loppnau, C.H.Arrowsmith A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Gtpase Nras
Chain: A
Fragment: Residues 1-172
Synonym: Transforming Protein N-Ras
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nras, Hras1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 63
R_factor 0.185 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.061 83.061 38.907 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.65 Å
ligand GDP, MG, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3con.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3CON
  • CSU: Contacts of Structural Units for 3CON
  • Likely Quarternary Molecular Structure file(s) for 3CON
  • Structure Factors (272 Kb)
  • Retrieve 3CON in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CON from S2C, [Save to disk]
  • Re-refined 3con structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CON in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CON
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CON, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3con] [3con_A]
  • SWISS-PROT database: [P01111]
  • Domain organization of [RASN_HUMAN] by SWISSPFAM
  • Domain found in 3CON: [RAS ] by SMART
  • Other resources with information on 3CON
  • Community annotation for 3CON at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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