3CRL	Transferase	date	Apr 07, 2008
title	Crystal Structure Of The Pdhk2-L2 Complex.
authors	K.M.Popov, M.Luo, T.J.Green, A.Grigorian, A.Klyuyeva, A.Tuganova
compound		source
Molecule: Pyruvate Dehydrogenase [Lipoamide] Kinase Isozyme Mitochondrial; Chain: A, B Synonym: Pyruvate Dehydrogenase Kinase Isoform 2, Pdk P45 Ec: 2.7.11.2 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Pdk2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
Molecule: Dihydrolipoyllysine-Residue Acetyltransferase Com Pyruvate Dehydrogenase Complex, Mitochondrial; Chain: C, D Fragment: Unp Residues 181-267 Synonym: Pyruvate Dehydrogenase Complex E2 Subunit, Pdce2, Dihydrolipoamide S-Acetyltransferase Component Of Pyruvate Dehydrogenase Complex, Pdc-E2, 70 Kda Mitochondrial Autoant Primary Biliary Cirrhosis, Pbc, M2 Antigen Complex 70 Kda S Ec: 2.3.1.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dlat, Dlta Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: P 1 21 1	R_factor 0.221 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.413 121.630 71.452 90.00 97.29 90.00
method	X-Ray Diffraction	resolution	2.61 Å
ligand	ANP, K, LA2, MG	enzyme	Transferase E.C.2.7.11.2 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and functional insights into the molecular mechanisms responsible for the regulation of pyruvate dehydrogenase kinase 2., Green T, Grigorian A, Klyuyeva A, Tuganova A, Luo M, Popov KM, J Biol Chem. 2008 Apr 3;. PMID:18387944

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (3crl.pdb1.gz) 154 Kb LPC: Ligand-Protein Contacts for 3CRL CSU: Contacts of Structural Units for 3CRL Likely Quarternary Molecular Structure file(s) for 3CRL Structure Factors (263 Kb) Retrieve 3CRL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CRL from S2C, [Save to disk] Re-refined 3crl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CRL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CRL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CRL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3crl_C] [3crl] [3crl_A] [3crl_D] [3crl_B] SWISS-PROT database: [P10515] [Q64536] Domain organization of [ODP2_HUMAN] [PDK2_RAT] by SWISSPFAM Domain found in 3CRL: [HATPase_c ] by SMART

Other resources with information on 3CRL

Community annotation for 3CRL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---