3CSY	Immune System Viral Protein	date	Apr 10, 2008
title	Crystal Structure Of The Trimeric Prefusion Ebola Virus Glyc In Complex With A Neutralizing Antibody From A Human Surviv
authors	J.E.Lee, M.L.Fusco, A.J.Hessell, W.B.Oswald, D.R.Burton, E.O.Saph
compound		source
Molecule: Fab Kz52 Heavy Chain Chain: A, C, E, G Fragment: Heavy Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_strain: Cho-K1 Expression_system_vector_type: Plasmid Other_details: The Antibody Was Identified From A Human Sur The 1995 Kikwit, Zaire Ebola Virus Outbreak;
Molecule: Fab Kz52 Light Chain Chain: B, D, F, H Fragment: Light Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_strain: Cho-K1 Expression_system_vector_type: Plasmid Other_details: The Antibody Was Identified From A Human Sur The 1995 Kikwit, Zaire Ebola Virus Outbreak;
Molecule: Envelope Glycoprotein Gp1 Chain: I, K, M, O Fragment: Deletion Of Residues 312-463 Engineered: Yes Mutation: Yes Other_details: Weak Or Discontinuous Electron Density Is Ob The Outer Regions Of The Glycoprotein (Residues 268-278 And And These Residues Are Tentatively Assigned;		Organism_scientific: Ebola Virus - Mayinga, Zaire, 1976 Organism_taxid: 128952 Strain: Mayinga-76 Gene: Gp Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_vector_type: Plasmid
Molecule: Envelope Glycoprotein Gp2 Chain: J, L, N, P Fragment: Deletion Of Residues 633-676 Engineered: Yes		Organism_scientific: Ebola Virus - Mayinga, Zaire, 1976 Organism_taxid: 128952 Strain: Mayinga-76 Gene: Gp Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_vector_type: Plasmid
symmetry	Space Group: H 3 2	R_factor 0.261 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 273.710 273.710 409.430 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.40 Å
ligand	BMA, MAN, MSE, NAG	enzyme
note	3CSY (Molecule of the Month:pdb178)
Primary reference	Structure of the Ebola virus glycoprotein bound to an antibody from a human survivor., Lee JE, Fusco ML, Hessell AJ, Oswald WB, Burton DR, Saphire EO, Nature. 2008 Jul 10;454(7201):177-82. PMID:18615077

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1030 Kb) [Save to disk] Biological Unit Coordinates (3csy.pdb1.gz) 742 Kb Biological Unit Coordinates (3csy.pdb2.gz) 738 Kb LPC: Ligand-Protein Contacts for 3CSY CSU: Contacts of Structural Units for 3CSY Likely Quarternary Molecular Structure file(s) for 3CSY Structure Factors (3892 Kb) Retrieve 3CSY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CSY from S2C, [Save to disk] Re-refined 3csy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CSY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CSY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CSY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3csy_K] [3csy_I] [3csy_L] [3csy_M] [3csy_J] [3csy_G] [3csy_A] [3csy_F] [3csy_H] [3csy_C] [3csy_B] [3csy_O] [3csy_D] [3csy_N] [3csy_P] [3csy_E] [3csy] SWISS-PROT database: [P04664] [P01857] [P01834] [P87666] [Q05320] Belongs to the avian leukosis virus gp95 fusion protein (alv-gp95) family according to TCDB. Domain organization of [HEMA_I69A0] [IGHG1_HUMAN] [IGKC_HUMAN] [VGP_EBOZ5] [VGP_EBOZM] by SWISSPFAM Domains found in 3CSY: [IG_like] [IGv ] by SMART

Other resources with information on 3CSY

Community annotation for 3CSY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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