3CSZ Hydrolase date Apr 10, 2008
title Crystal And Cryoem Structural Studies Of A Cell Wall Degradi In The Bacteriophage Phi29 Tail
authors Y.Xiang, M.G.Rossmann
compound source
Molecule: Morphogenesis Protein 1
Chain: A
Synonym: Late Protein Gp13
Engineered: Yes
Organism_scientific: Bacteriophage Phi-29
Gene: 13
Expression_system: Escherichia Coli
Expression_system_strain: Bl21de3 Codon Plus Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb1
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.876 69.350 70.728 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand NAG enzyme
Primary referenceCrystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail., Xiang Y, Morais MC, Cohen DN, Bowman VD, Anderson DL, Rossmann MG, Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9552-7. Epub 2008 Jul 7. PMID:18606992
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3csz.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3CSZ
  • CSU: Contacts of Structural Units for 3CSZ
  • Likely Quarternary Molecular Structure file(s) for 3CSZ
  • Structure Factors (100 Kb)
  • Retrieve 3CSZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CSZ from S2C, [Save to disk]
  • Re-refined 3csz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CSZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CSZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CSZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3csz_A] [3csz]
  • SWISS-PROT database: [P15132]
  • Domain organization of [VG13_BPPH2] by SWISSPFAM
  • Other resources with information on 3CSZ
  • Community annotation for 3CSZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science