3CU0	Transferase	date	Apr 15, 2008
title	Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In Complex And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser
authors	Y.Tone, L.C.Pedersen, T.Yamamoto, H.Kitagawa, J.Nishihara-Shimiz J.Tamura, M.Negishi, K.Sugahara
compound		source
Molecule: Galactosylgalactosylxylosylprotein 3-Beta- Glucuronosyltransferase 3; Chain: A, B Fragment: Catalytic Domain, Unp Residues 76-335 Synonym: Beta-1,3-Glucuronyltransferase 3, Glucuronosyltran Glcat-I, Udp-Glcua: Gal Beta-1,3-Gal-R Glucuronyltransferase I; Ec: 2.4.1.135 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B3gat3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_vector: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.210 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.047 48.399 103.708 90.00 92.40 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	GAL, MN, SO4, UDP	enzyme	Transferase E.C.2.4.1.135 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	2-O-phosphorylation of xylose and 6-O-sulfation of galactose in the protein linkage region of glycosaminoglycans influence the glucuronyltransferase-I activity involved in the linkage region's synthesis., Tone Y, Pedersen LC, Yamamoto T, Izumikawa T, Kitagawa H, Nishihara J, Tamura JI, Negishi M, Sugahara K, J Biol Chem. 2008 Apr 9;. PMID:18400750

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (3cu0.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 3CU0 CSU: Contacts of Structural Units for 3CU0 Likely Quarternary Molecular Structure file(s) for 3CU0 Structure Factors (604 Kb) Retrieve 3CU0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CU0 from S2C, [Save to disk] Re-refined 3cu0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CU0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CU0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CU0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cu0_A] [3cu0] [3cu0_B] SWISS-PROT database: [O94766] Domain organization of [B3GA3_HUMAN] by SWISSPFAM

Other resources with information on 3CU0

Community annotation for 3CU0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---