3CY3 Transferase date Apr 25, 2008
title Crystal Structure Of Human Proto-Oncogene Serine Threonine K (Pim1) In Complex With A Consensus Peptide And The Jnk Inhi
authors P.Filippakopoulos, A.Bullock, O.Fedorov, A.C.W.Pike, F.Von Delft C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp, Structural Gen Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Kinase Pim-1
Chain: A
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pim1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4

Molecule: Pimtide Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 65
R_factor 0.163 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.239 98.239 80.723 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.15 Å
ligand EDO, JN5, SEP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3cy3.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3CY3
  • CSU: Contacts of Structural Units for 3CY3
  • Likely Quarternary Molecular Structure file(s) for 3CY3
  • Structure Factors (373 Kb)
  • Retrieve 3CY3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CY3 from S2C, [Save to disk]
  • Re-refined 3cy3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CY3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CY3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CY3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cy3] [3cy3_B] [3cy3_A]
  • SWISS-PROT database: [P11309]
  • Domain organization of [PIM1_HUMAN] by SWISSPFAM
  • Domain found in 3CY3: [S_TKc ] by SMART
    • Other resources with information on 3CY3
  • Community annotation for 3CY3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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