3D0G Crystal structure of spike protein receptor-binding domain from the 2002-2003 SARS coronavirus human strain complexed with human-civet chimeric receptor ACE2 date
authors Li, F.
compound source
R_Free 0.279
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand CL, NAG, NDG, ZN enzyme
A, B

Primary referenceStructural analysis of major species barriers between humans and palm civets for severe acute respiratory syndrome coronavirus infections., Li F, J Virol. 2008 Jul;82(14):6984-91. Epub 2008 Apr 30. PMID:18448527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (488 Kb) [Save to disk]
  • Biological Unit Coordinates (3d0g.pdb1.gz) 479 Kb
  • LPC: Ligand-Protein Contacts for 3D0G
  • CSU: Contacts of Structural Units for 3D0G
  • Likely Quarternary Molecular Structure file(s) for 3D0G
  • Structure Factors (390 Kb)
  • Retrieve 3D0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D0G from S2C, [Save to disk]
  • Re-refined 3d0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D0G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D0G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d0g_A] [3d0g_F] [3d0g_B] [3d0g] [3d0g_E]
  • SWISS-PROT database: [Q9BYF1] [P59594]
  • Domain organization of [ACE2_HUMAN] [SPIKE_CVHSA] by SWISSPFAM
  • Other resources with information on 3D0G
  • Community annotation for 3D0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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