3D1F		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	323, PEG	enzyme
Gene Ontology	Chain Function Process Component A, B 3'-5' exonuclease activity
Primary reference	Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp., Georgescu RE, Yurieva O, Kim SS, Kuriyan J, Kong XP, O'Donnell M, Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11116-21. Epub 2008 Aug 4. PMID:18678908

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk] Biological Unit Coordinates (3d1f.pdb1.gz) 128 Kb LPC: Ligand-Protein Contacts for 3D1F CSU: Contacts of Structural Units for 3D1F Likely Quarternary Molecular Structure file(s) for 3D1F Structure Factors (599 Kb) Retrieve 3D1F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D1F from S2C, [Save to disk] Re-refined 3d1f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D1F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d1f] [3d1f_A] [3d1f_B] [3d1f_P] [3d1f_Q] SWISS-PROT database: [P0A988] Domain found in 3D1F: [POL3Bc ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---