3D2Y		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	AH0, FGA, GOL	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Specific Structural Features of the N-Acetylmuramoyl-l-Alanine Amidase AmiD from Escherichia coli and Mechanistic Implications for Enzymes of This Family., Kerff F, Petrella S, Mercier F, Sauvage E, Herman R, Pennartz A, Zervosen A, Luxen A, Frere JM, Joris B, Charlier P, J Mol Biol. 2009 Dec 28. PMID:20036252

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3d2y.pdb1.gz) 50 Kb Biological Unit Coordinates (3d2y.pdb2.gz) 97 Kb LPC: Ligand-Protein Contacts for 3D2Y CSU: Contacts of Structural Units for 3D2Y Likely Quarternary Molecular Structure file(s) for 3D2Y Structure Factors (622 Kb) Retrieve 3D2Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D2Y from S2C, [Save to disk] Re-refined 3d2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D2Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d2y] [3d2y_A] [3d2y_B] SWISS-PROT database: [P75820] Domain found in 3D2Y: [Ami_2 ] by SMART

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