3D4J		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Human mevalonate diphosphate decarboxylase: characterization, investigation of the mevalonate diphosphate binding site, and crystal structure., Voynova NE, Fu Z, Battaile KP, Herdendorf TJ, Kim JJ, Miziorko HM, Arch Biochem Biophys. 2008 Dec 1;480(1):58-67. Epub 2008 Sep 18. PMID:18823933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk] Biological Unit Coordinates (3d4j.pdb1.gz) 115 Kb LPC: Ligand-Protein Contacts for 3D4J CSU: Contacts of Structural Units for 3D4J Likely Quarternary Molecular Structure file(s) for 3D4J Structure Factors (265 Kb) Retrieve 3D4J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D4J from S2C, [Save to disk] Re-refined 3d4j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D4J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d4j] [3d4j_A] [3d4j_B] SWISS-PROT database: [P53602]

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