3D4M	Oxidoreductase	date	May 14, 2008
title	Glutaredoxin 2 Oxidized Structure
authors	K.F.Discola, M.A.De Oliveira, J.A.Barcena, P.Porras, B.G.Guimara L.E.S.Netto
compound		source
Molecule: Glutaredoxin-2, Mitochondrial Chain: A Synonym: Thioltransferase, Glutathione-Dependent Oxidoreduc Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Yeast Organism_taxid: 4932 Gene: Grx2, Ttr, Ttr1, Ydr513w, D9719.17 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 41 21 2	R_factor 0.180 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.634 47.634 94.592 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structural aspects of the distinct biochemical properties of glutaredoxin 1 and glutaredoxin 2 from Saccharomyces cerevisiae., Discola KF, de Oliveira MA, Rosa Cussiol JR, Monteiro G, Barcena JA, Porras P, Padilla CA, Guimaraes BG, Netto LE, J Mol Biol. 2009 Jan 23;385(3):889-901. Epub 2008 Oct 28. PMID:18992757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk] Biological Unit Coordinates (3d4m.pdb1.gz) 19 Kb CSU: Contacts of Structural Units for 3D4M Likely Quarternary Molecular Structure file(s) for 3D4M Structure Factors (109 Kb) Retrieve 3D4M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D4M from S2C, [Save to disk] Re-refined 3d4m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D4M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D4M

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D4M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d4m] [3d4m_A] SWISS-PROT database: [P17695] Domain organization of [GLRX2_YEAST] by SWISSPFAM

Other resources with information on 3D4M

Community annotation for 3D4M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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