3D4Q	Transferase	date	May 14, 2008
title	Pyrazole-Based Inhibitors Of B-Raf Kinase
authors	T.Morales, G.P.A.Vigers, B.J.Brandhuber
compound		source
Molecule: B-Raf Proto-Oncogene Serinethreonine-Protein Kin Chain: A, B Fragment: Residues 432-726 Synonym: P94, V-Raf Murine Sarcoma Viral Oncogene Homolog B Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Hi-5 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 41 21 2	R_factor 0.216 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.343 100.343 162.536 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	SM5	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Potent and selective pyrazole-based inhibitors of B-Raf kinase., Hansen JD, Grina J, Newhouse B, Welch M, Topalov G, Littman N, Callejo M, Gloor S, Martinson M, Laird E, Brandhuber BJ, Vigers G, Morales T, Woessner R, Randolph N, Lyssikatos J, Olivero A, Bioorg Med Chem Lett. 2008 Aug 15;18(16):4692-5. Epub 2008 Jul 5. PMID:18676143

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3d4q.pdb1.gz) 44 Kb Biological Unit Coordinates (3d4q.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 3D4Q CSU: Contacts of Structural Units for 3D4Q Likely Quarternary Molecular Structure file(s) for 3D4Q Structure Factors (174 Kb) Retrieve 3D4Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D4Q from S2C, [Save to disk] Re-refined 3d4q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D4Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D4Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D4Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d4q_B] [3d4q_A] [3d4q] SWISS-PROT database: [P15056] Domain organization of [BRAF_HUMAN] by SWISSPFAM Domain found in 3D4Q: [STYKc ] by SMART

Other resources with information on 3D4Q

Community annotation for 3D4Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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