OCA Atlas for 3D54

3D54

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ADP, CYG, NA

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, I
G, B, K, C, J, F
L, H, D

Primary reference

Formylglycinamide ribonucleotide amidotransferase from Thermotoga maritima: structural insights into complex formation., Morar M, Hoskins AA, Stubbe J, Ealick SE, Biochemistry. 2008 Jul 29;47(30):7816-30. Epub 2008 Jul 3. PMID:18597481

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (447 Kb) [Save to disk]

Biological Unit Coordinates (3d54.pdb1.gz) 149 Kb

Biological Unit Coordinates (3d54.pdb2.gz) 152 Kb

Biological Unit Coordinates (3d54.pdb3.gz) 152 Kb

LPC: Ligand-Protein Contacts for 3D54

CSU: Contacts of Structural Units for 3D54

Likely Quarternary Molecular Structure file(s) for 3D54

Structure Factors (1251 Kb)

Retrieve 3D54 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3D54 from S2C, [Save to disk]

Re-refined 3d54 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D54 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d54] [3d54_A] [3d54_B] [3d54_C] [3d54_D] [3d54_E] [3d54_F] [3d54_G] [3d54_H] [3d54_I] [3d54_J] [3d54_K] [3d54_L]

SWISS-PROT database: [Q9X0X3] [Q9X0X2] [Q9X0X1]

Domain found in 3D54: [GATase_5 ] by SMART

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