3D5L Signaling Protein date May 16, 2008
title Crystal Structure Of Regulatory Protein Recx
authors R.Agarwal, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Regulatory Protein Recx
Chain: A, B
Fragment: Residues 2-211
Engineered: Yes
 Organism_scientific: Lactobacillus Reuteri
Organism_taxid: 349123
Strain: 100-23
Gene: Lreu23draft_0930
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)(Ripl)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.190 81.924 124.766 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand SO4 enzyme
Gene LREU23DRAFT
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3d5l.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (3d5l.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3D5L
  • CSU: Contacts of Structural Units for 3D5L
  • Likely Quarternary Molecular Structure file(s) for 3D5L
  • Structure Factors (166 Kb)
  • Retrieve 3D5L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D5L from S2C, [Save to disk]
  • Re-refined 3d5l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3D5L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3D5L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D5L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d5l_B] [3d5l] [3d5l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3D5L
  • Community annotation for 3D5L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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