3D5M		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	4MS BindingDB	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Structure-based design, synthesis, and biological evaluation of 1,1-dioxoisothiazole and benzo[b]thiophene-1,1-dioxide derivatives as novel inhibitors of hepatitis C virus NS5B polymerase., Kim SH, Tran MT, Ruebsam F, Xiang AX, Ayida B, McGuire H, Ellis D, Blazel J, Tran CV, Murphy DE, Webber SE, Zhou Y, Shah AM, Tsan M, Showalter RE, Patel R, Gobbi A, LeBrun LA, Bartkowski DM, Nolan TG, Norris DA, Sergeeva MV, Kirkovsky L, Zhao Q, Han Q, Kissinger CR, Bioorg Med Chem Lett. 2008 Jul 15;18(14):4181-5. Epub 2008 May 24. PMID:18554907

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (3d5m.pdb1.gz) 91 Kb Biological Unit Coordinates (3d5m.pdb2.gz) 91 Kb LPC: Ligand-Protein Contacts for 3D5M CSU: Contacts of Structural Units for 3D5M Likely Quarternary Molecular Structure file(s) for 3D5M Structure Factors (881 Kb) Retrieve 3D5M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D5M from S2C, [Save to disk] Re-refined 3d5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D5M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d5m] [3d5m_A] [3d5m_B] SWISS-PROT database: [P26663]

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