3D77 Crystal structure of a pheromone binding protein mutant D35N, from Apis mellifera, soaked at pH 4.0 date
authors Pesenti, M.E., Spinelli, S., Bezirard, V., Briand, L., Pernollet, J.C., Tegoni, M., Cambillau, C.
compound source
symmetry
R_factor
R_Free 0.19131
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand EDO, NA, NBB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceQueen Bee Pheromone Binding Protein pH-Induced Domain Swapping Favors Pheromone Release., Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Campanacci V, Tegoni M, Cambillau C, J Mol Biol. 2009 May 28. PMID:19481550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3d77.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3D77
  • CSU: Contacts of Structural Units for 3D77
  • Likely Quarternary Molecular Structure file(s) for 3D77
  • Structure Factors (833 Kb)
  • Retrieve 3D77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D77 from S2C, [Save to disk]
  • Re-refined 3d77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D77
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D77, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d77] [3d77_A]
  • SWISS-PROT database: [Q9U9J6]
  • Domain organization of [Q9U9J6_APIME] by SWISSPFAM
  • Domain found in 3D77: [PhBP ] by SMART
  • Other resources with information on 3D77
  • Community annotation for 3D77 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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