3D80 Oxidoreductase date May 22, 2008
title Structural Analysis Of A Holo Enzyme Complex Of Mouse Dihydr Reductase With Nadph And A Ternary Complex Wtih The Potent Selective Inhibitor 2,4-Diamino-6-(2'-Hydroxydibenz[B,F]Aze Methylpteridine
authors V.Cody
compound source
Molecule: Dihydrofolate Reductase
Chain: A
Fragment: Mouse Dihdyrofolate Reductase
Ec: 1.5.1.3
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Strain: Jm105
Gene: Dhfr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pph70d
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.482 61.300 43.589 90.00 117.23 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand GOL, NDP, Q22 enzyme Oxidoreductase E.C.1.5.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of a holoenzyme complex of mouse dihydrofolate reductase with NADPH and a ternary complex with the potent and selective inhibitor 2,4-diamino-6-(2'-hydroxydibenz[b,f]azepin-5-yl)methylpteridine., Cody V, Pace J, Rosowsky A, Acta Crystallogr D Biol Crystallogr. 2008 Sep;64(Pt 9):977-84. Epub 2008, Aug 13. PMID:18703847
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3d80.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3D80
  • CSU: Contacts of Structural Units for 3D80
  • Likely Quarternary Molecular Structure file(s) for 3D80
  • Structure Factors (476 Kb)
  • Retrieve 3D80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D80 from S2C, [Save to disk]
  • Re-refined 3d80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3D80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3D80
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D80, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d80_A] [3d80]
  • SWISS-PROT database: [P00375]
  • Domain organization of [DYR_MOUSE] by SWISSPFAM
    • Other resources with information on 3D80
  • Community annotation for 3D80 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science