3D8K Hydrolase date May 23, 2008
title Crystal Structure Of A Phosphatase From A Toxoplasma Gondii
authors L.Damodharan, S.K.Burley, S.Swaminathan, New York Sgx Research For Structural Genomics (Nysgxrc)
compound source
Molecule: Protein Phosphatase 2c
Chain: A, B, C, D
Synonym: Pp2c
Engineered: Yes
Organism_scientific: Toxoplasma Gondii
Organism_taxid: 5811
Gene: Pp2c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3(Ripl)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.251 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.882 169.052 87.012 90.00 104.47 90.00
method X-Ray Diffractionresolution 2.71 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (3d8k.pdb1.gz) 216 Kb
  • LPC: Ligand-Protein Contacts for 3D8K
  • CSU: Contacts of Structural Units for 3D8K
  • Likely Quarternary Molecular Structure file(s) for 3D8K
  • Structure Factors (357 Kb)
  • Retrieve 3D8K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D8K from S2C, [Save to disk]
  • Re-refined 3d8k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D8K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D8K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D8K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d8k] [3d8k_C] [3d8k_B] [3d8k_A] [3d8k_D]
  • SWISS-PROT database: [A4GX63]
  • Domain organization of [A4GX63_TOXGO] by SWISSPFAM
  • Domain found in 3D8K: [PP2Cc ] by SMART
  • Other resources with information on 3D8K
  • Community annotation for 3D8K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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