3D8W Lyase date May 26, 2008
title Use Of A Carbonic Anhydrase II, Ix Active-Site Mimic, For Th Of Screening Inhibitors For Possible Anti-Cancer Properties
authors C.Genis, K.H.Sippel, N.Case, L.Govindasamy, M.Agbandje-Mckenna, R
compound source
Molecule: Carbonic Anhydrase II
Chain: A
Synonym: Carbonic Anhydrase 2, Carbonate Dehydratase II, Ca Carbonic Anhydrase C, Cac;
Ec: 4.2.1.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.808 42.059 72.720 90.00 104.61 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand D8W, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of a Carbonic Anhydrase IX Active-Site Mimic To Screen Inhibitors for Possible Anticancer Properties (dagger) (double dagger)., Genis C, Sippel KH, Case N, Cao W, Avvaru BS, Tartaglia LJ, Govindasamy L, Tu C, Agbandje-McKenna M, Silverman DN, Rosser CJ, McKenna R, Biochemistry. 2009 Jan 26. PMID:19170619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3d8w.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3D8W
  • CSU: Contacts of Structural Units for 3D8W
  • Likely Quarternary Molecular Structure file(s) for 3D8W
  • Structure Factors (391 Kb)
  • Retrieve 3D8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D8W from S2C, [Save to disk]
  • Re-refined 3d8w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D8W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D8W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d8w] [3d8w_A]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 3D8W: [Carb_anhydrase ] by SMART
  • Other resources with information on 3D8W
  • Community annotation for 3D8W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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