3DA1 Oxidoreductase date May 28, 2008
title X-Ray Structure Of The Glycerol-3-Phosphate Dehydrogenase From Bacillus Halodurans Complexed With Fad. Northeast Structural Genomics Consortium Target Bhr167.
authors A.P.Kuzin, M.Abashidze, J.Seetharaman, D.Wang, H.Janjua, L.Owens, R.Xiao, R.Nair, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Glycerol-3-Phosphate Dehydrogenase
Chain: A
 Organism_scientific: Bacillus Halodurans
symmetry Space Group: C 2 2 21
R_factor 0.222 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.767 96.953 226.057 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand FAD, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3da1.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 3DA1
  • CSU: Contacts of Structural Units for 3DA1
  • Likely Quarternary Molecular Structure file(s) for 3DA1
  • Structure Factors (422 Kb)
  • Retrieve 3DA1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DA1 from S2C, [Save to disk]
  • Re-refined 3da1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DA1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DA1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DA1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p3da1, region A:11-106 [Jmol] [rasmolscript] [script source]
        - Domain d1u3da1, region A:198-497 [Jmol] [rasmolscript] [script source]
        - Domain d1k3da1, region A:228-540 [Jmol] [rasmolscript] [script source]
        - Domain d1m3da1, region A:5-114 [Jmol] [rasmolscript] [script source]
        - Domain d1h3da1, region A:5-224 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3da1_A] [3da1]
  • SWISS-PROT database: [Q9KDW6]
  • Domain organization of [Q9KDW6_BACHD] by SWISSPFAM
    • Other resources with information on 3DA1
  • Community annotation for 3DA1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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