3DBA date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 35G, GOL enzyme
Primary referenceThe Structure of the GAF A Domain from Phosphodiesterase 6C Reveals Determinants of cGMP Binding, a Conserved Binding Surface, and a Large cGMP-dependent Conformational Change., Martinez SE, Heikaus CC, Klevit RE, Beavo JA, J Biol Chem. 2008 Sep 19;283(38):25913-9. Epub 2008 Jul 9. PMID:18614542
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3dba.pdb1.gz) 114 Kb
  • Biological Unit Coordinates (3dba.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (3dba.pdb3.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 3DBA
  • CSU: Contacts of Structural Units for 3DBA
  • Likely Quarternary Molecular Structure file(s) for 3DBA
  • Structure Factors (118 Kb)
  • Retrieve 3DBA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DBA from S2C, [Save to disk]
  • Re-refined 3dba structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DBA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dba] [3dba_A] [3dba_B]
  • SWISS-PROT database: [P52731]
  • Domain found in 3DBA: [GAF ] by SMART

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